They have about four hours budgeted - it’s conservative, but Merrin would like them to NOT be taking ANY risk of getting caught in the tidal bore even if there are problems.
The river current speed is inconveniently wildly variable. If they ever do this again then Merrin will have great data! But right now she’s having to repeatedly recalculate and extrapolate how much ground they’ll be covering in an hour, knowing that they have to get almost 20 kilometers back.
The current is definitely not going to be obliging enough to carry them that far within 48 minutes. It starts out moving not much more than 5 kilometers per hour - a twelve-minute spell will cover a little over a kilometer, out of 18 - but Merrin does have an approximate suit-recorded map of "this bit looked like it was fast".
Prooobably Estha will get the most ground covered out of his limited-duration spells if they time it for fast bits, but the bag might be slightly more likely to have settled in a slow bit, so Merrin is pretty unsure on that? She will just do her best to keep updating him on her extrapolation of what distance he'll cover in 12 or 24 minutes, using the suit microphone-and-amplifier to somewhat awkwardly shout things to him while she swings ahead of the boat to scout out possible obstacles she might need to nudge it away from.
They will definitely have time margin to look at caves, though it sounds like they can't be Locating Objects for anywhere close to the full duration of the trip, and it might make the most sense on this trip to just get recorded suit-camera footage and magical-geography-knowledge audio for Merrin to later turn into more detailed maps.